Postings under ( protein )

27. December 2011
A Fundamental Breakthrough in Protein Folding
13. December 2011
Magic Numbers and unit conversions in Structural Biology
15. November 2011
The infidelity of the theoretical protein backbone
1. August 2011
The GPCR-G complex: the canonical structure of Cell Signaling (with interactive guide)
28. May 2011
Purity in the atomic force-fields of molecular dynamics simulations
27. April 2011
Multiple Widget Embedding for Jolecule
17. April 2011
Scripting Structural Displays of Proteins
6. March 2011
WebGL makes inroads into the browser for the foot soldiers of Biochemisty
24. February 2011
Jolecule widgets for your embedding pleasure!
25. November 2010
Schrödinger's "What is Life"
24. September 2010
We have scalability issues
24. September 2010
Jolecule Example: RNase
18. September 2010
Spinning DNA around the histone
15. September 2010
Rotation gone wrong
11. September 2010
Formation of water shells in protein equilibration
10. September 2010
HTML5 mojo: JOLECULE, a javascript protein viewer that runs on the web
27. August 2010
Explicitly heating your protein
28. July 2010
Why bioinformatics !== compstructbio, or why Rosetta is not a glorified SVM
11. July 2010
The 2 billion dollar protein sequencing error
30. May 2010
The Theory of Single Domain Allostery
20. March 2010
How the hell do I model this thing?
5. January 2010
A Decade in Computational Structural Biology
25. October 2009
The bioinformatic-journal/software hydrid
19. October 2009
Local Perturbations in Explicit Solvent
16. October 2009
Molecular Dynamics and things like that
3. September 2009
Protein Society Symposium Report
12. July 2009
Heat a residue in a protein, large loops pop out
23. May 2009
Thousands of hours of Molecular Dynamics saves you minutes of a Monte Carlo calculation
12. May 2009
Bionostalgia: Notes to an Even Younger Computational Biologist
17. April 2009
Structural alignment done right
31. March 2009
Gallery of Membrane Protein Structures
4. March 2009
Bioinformatics in the Near Concurrent Future
26. February 2009
An Annotated History of Molecular Dynamics
9. February 2009
How efficient is Molecular Dynamics?
4. February 2009
Lazy, lazy crystallographers
13. October 2008
How the Serpin protein traps the digestive powers of the enzyme Serine Protease
7. October 2008
What is Computational Biology?
2. October 2008
Computational Chemistry Challenge: the Power Stroke of Myosin that powers Muscle Contraction
25. September 2008
How to Compute Chemistry, Conference Report
23. August 2008
A Bird's Eye-View of Bioinformatic Journals
22. July 2008
How History affects Pattern Matching inside the Genome
11. June 2008
Finding fellow bottom feeders
13. March 2008
How to build a cathedral door out of 456 proteins
19. February 2008
Wicked Approximations: proteins move like a network of springs
7. February 2008
How to avoid futility: a guide to parameterizing non-standard amino acids in AMBER
5. February 2008
Interview Me
8. December 2007
Coding randomness not so naïvely
3. December 2007
Poking my eyes out with Amber, again
23. November 2007
asa.py - accessible surface area
19. November 2007
match.py - calculating the RMSD of PDB structures
19. October 2007
Calculating the solvent Accessible Surface Area (ASA)
1. October 2007
Parsing PDB files: sometimes you really should reinvent the wheel
16. September 2007
Grilling Juicy Steaks: The Best Introduction to Salt Effects in Cell Biology I have Ever Read
12. August 2007
A Most Ugly Hack: translating from CHARMM to AMBER trajectories
10. August 2007
Fetching PDB files remotely in pure Python code
10. May 2007
The Schrodinger Equation in Action
9. May 2007
Wet Holes in the Membrane
8. May 2007
Dragging an ion through the nicotonic channel
8. May 2007
Seeing a carbon-monoxide molecule escaping from the clutches of the Myoglobin protein
7. May 2007
Beautiful movies of X-ray Crystallography Refinement
21. March 2007
A Sign, a Flipped Structure, and a Scientific Flameout of Epic Proportions
13. March 2007
Notes to a young computational biologist
11. February 2007
Heating up a Protein, One residue at a time
25. January 2007
Simulating a very small peptide: enkephalin
31. December 2006
Come together, electrostatically, as one
30. December 2006
Looking at the surface of a membrane
13. November 2006
What is a molecule?
23. September 2006
Structural features of the Beta-sheet
7. August 2006
The Mysterious Regions of the Ramachandran Plot
14. July 2006
Why AMBER sticks a finger in its users eyes.
5. October 2005
Of proteins, clusters and musical chairs
24. September 2005
Transcription as Compilation
12. June 2004
We can fold it for you wholesale
31. December 1969
RMSD: Root Mean Square Deviation
4. February 2012
The Ten Commandments of Protein Folding